The Protein ID search, provided by SEDB, is designed
to give information on a Protein ID (protein
coding intron containing genes only) Currently SEDB contains 238,060 genes based on
GenBank
release 146. The gene structure data is developed in-house using
modified scripts from
EID.
Once a Protein ID is entered information is
retrieved and displayed, along with any sequence relationships to protein
structures
found in the
PDB using BLAST. A
SKY file is created (allows Friend to show Exon boundaries and
intron phases in color - red phase 0 intron, green - phase 1, and blue - phase 2), which shows all hits in a multiple pair-wise
format in
Friend, along with multiple protein structures aligned by sequence
alignment. To see an example of results press
here.